When I segmented 3D MRI and CT scan images before I used the contrast borders for help a lot. There were some algorithms for finding edges that you could tune by setting search radiuses and thresholds. There was also an option of growing an area by a certain amount of pixels outward, and then threshholding the result back down to only the brighter parts, that kind of thing. You had to be a little clever about how you’d combine it. And ultimately, sometimes I just had to add and subtract a few points manually.
Segmenting is more assigning areas to distinct objects (separating bones from the rest in my case), but you could totally use it as a basis for coloring, so I assume the process is similar here.
how were the colours added? like do you carefully select each isolated cell to add the colour or is there some kind of algorithm?
When I segmented 3D MRI and CT scan images before I used the contrast borders for help a lot. There were some algorithms for finding edges that you could tune by setting search radiuses and thresholds. There was also an option of growing an area by a certain amount of pixels outward, and then threshholding the result back down to only the brighter parts, that kind of thing. You had to be a little clever about how you’d combine it. And ultimately, sometimes I just had to add and subtract a few points manually.
Segmenting is more assigning areas to distinct objects (separating bones from the rest in my case), but you could totally use it as a basis for coloring, so I assume the process is similar here.